feat!: drop modules, general refactor and cleanup

runtime/queries/markdown_inline/highlights.scm

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+; From MDeiml/tree-sitter-markdown
+(code_span) @markup.raw @nospell
+
+(emphasis) @markup.italic
+
+(strong_emphasis) @markup.strong
+
+(strikethrough) @markup.strikethrough
+
+(shortcut_link
+  (link_text) @nospell)
+
+[
+  (backslash_escape)
+  (hard_line_break)
+] @string.escape
+
+; Conceal codeblock and text style markers
+([
+  (code_span_delimiter)
+  (emphasis_delimiter)
+] @conceal
+  (#set! conceal ""))
+
+; Conceal inline links
+(inline_link
+  [
+    "["
+    "]"
+    "("
+    (link_destination)
+    ")"
+  ] @markup.link
+  (#set! conceal ""))
+
+[
+  (link_label)
+  (link_text)
+  (link_title)
+  (image_description)
+] @markup.link.label
+
+((inline_link
+  (link_destination) @_url) @_label
+  (#set! @_label url @_url))
+
+((image
+  (link_destination) @_url) @_label
+  (#set! @_label url @_url))
+
+; Conceal image links
+(image
+  [
+    "!"
+    "["
+    "]"
+    "("
+    (link_destination)
+    ")"
+  ] @markup.link
+  (#set! conceal ""))
+
+; Conceal full reference links
+(full_reference_link
+  [
+    "["
+    "]"
+    (link_label)
+  ] @markup.link
+  (#set! conceal ""))
+
+; Conceal collapsed reference links
+(collapsed_reference_link
+  [
+    "["
+    "]"
+  ] @markup.link
+  (#set! conceal ""))
+
+; Conceal shortcut links
+(shortcut_link
+  [
+    "["
+    "]"
+  ] @markup.link
+  (#set! conceal ""))
+
+[
+  (link_destination)
+  (uri_autolink)
+  (email_autolink)
+] @markup.link.url @nospell
+
+((uri_autolink) @_url
+  (#offset! @_url 0 1 0 -1)
+  (#set! @_url url @_url))
+
+(entity_reference) @nospell
+
+; Replace common HTML entities.
+((entity_reference) @character.special
+  (#eq? @character.special " ")
+  (#set! conceal " "))
+
+((entity_reference) @character.special
+  (#eq? @character.special "<")
+  (#set! conceal "<"))
+
+((entity_reference) @character.special
+  (#eq? @character.special "&gt;")
+  (#set! conceal ">"))
+
+((entity_reference) @character.special
+  (#eq? @character.special "&amp;")
+  (#set! conceal "&"))
+
+((entity_reference) @character.special
+  (#eq? @character.special "&quot;")
+  (#set! conceal "\""))
+
+((entity_reference) @character.special
+  (#any-of? @character.special "&ensp;" "&emsp;")
+  (#set! conceal " "))

runtime/queries/markdown_inline/injections.scm

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+((html_tag) @injection.content
+  (#set! injection.language "html")
+  (#set! injection.combined))
+
+((latex_block) @injection.content
+  (#set! injection.language "latex")
+  (#set! injection.include-children))